fig2

Use of “default” parameter settings when analyzing single cell RNA sequencing data using Seurat: a biologist's perspective

Figure 2. UMAP projection of 4,344 ells from an ovarian cancer tumor specimen colored by cluster number (A); number of cells per cluster (B); and cells colored by cell type determined by analysis of upregulated genes in each cluster compared to gene lists of known cell types (C) (see Methods). Blue: cancer epithelial cells; red: fibroblasts; yellow: immune cells; green: endothelial cells. UMAP: uniform manifold approximation and projection

Journal of Translational Genetics and Genomics
ISSN 2578-5281 (Online)
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